CRAN Package Check Results for Package NSA

Last updated on 2014-07-28 01:48:04.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.0.32 3.17 40.51 43.68 NOTE
r-devel-linux-x86_64-debian-gcc 0.0.32 3.17 40.32 43.49 NOTE
r-devel-linux-x86_64-fedora-clang 0.0.32 96.50 NOTE
r-devel-linux-x86_64-fedora-gcc 0.0.32 89.10 NOTE
r-devel-osx-x86_64-clang 0.0.32 83.31 NOTE
r-devel-windows-ix86+x86_64 0.0.32 13.00 66.00 79.00 NOTE
r-patched-linux-x86_64 0.0.32 3.31 40.68 44.00 NOTE
r-patched-solaris-sparc 0.0.32 604.90 NOTE
r-patched-solaris-x86 0.0.32 120.80 NOTE
r-release-linux-ix86 0.0.32 4.90 62.41 67.32 NOTE
r-release-linux-x86_64 0.0.32 3.56 44.05 47.62 NOTE
r-release-osx-x86_64-mavericks 0.0.32 NOTE
r-release-osx-x86_64-snowleopard 0.0.32 NOTE
r-release-windows-ix86+x86_64 0.0.32 14.00 69.00 83.00 NOTE
r-oldrel-windows-ix86+x86_64 0.0.32 14.00 80.00 94.00 NOTE

Check Details

Version: 0.0.32
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     R.methodsS3 MASS matrixStats R.oo R.utils aroma.core
     aroma.affymetrix DNAcopy
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 0.0.32
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     DNAcopy MASS R.methodsS3 R.oo aroma.affymetrix aroma.core
     matrixStats
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.0.32
Check: R code for possible problems
Result: NOTE
    NB: .First.lib is obsolete and will not be used in R >= 3.0.0
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.0.32
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     incl
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.0.32
Check: Rd line widths
Result: NOTE
    Rd file 'NSANormalization.Rd':
     \examples lines wider than 100 characters:
     by <- 50e3; # 50kb bins; you may want to try with other amounts of smoothing xOut <- seq(from=xRange[1], to=xRange[2], by=by);
     plot(getSignals(cnCNPS), getSignals(cnSNPS), xlim=Clim, ylim=Clim); abline(a=0, b=1, col="red", lwd=2);
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc