CRAN Package Check Results for Package gstudio

Last updated on 2015-05-26 12:47:17.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3 5.92 80.45 86.37 ERROR
r-devel-linux-x86_64-debian-gcc 1.3 5.44 74.61 80.05 ERROR
r-devel-linux-x86_64-fedora-clang 1.3 111.81 ERROR
r-devel-linux-x86_64-fedora-gcc 1.3 157.05 ERROR
r-devel-osx-x86_64-clang 1.3 139.89 ERROR
r-devel-windows-ix86+x86_64 1.3 19.00 117.00 136.00 ERROR
r-patched-linux-x86_64 1.3 5.37 74.27 79.64 WARN
r-patched-solaris-sparc 1.3 980.80 WARN --no-vignettes
r-patched-solaris-x86 1.3 186.10 WARN
r-release-linux-x86_64 1.3 5.73 77.42 83.14 WARN
r-release-osx-x86_64-mavericks 1.3 NOTE
r-release-osx-x86_64-snowleopard 1.3 ERROR
r-release-windows-ix86+x86_64 1.3 20.00 119.00 139.00 WARN
r-oldrel-windows-ix86+x86_64 1.3 28.00 169.00 197.00 OK

Check Details

Version: 1.3
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.3
Check: use of S3 registration
Result: WARN
    Registered S3 method from a standard package overwritten by 'gstudio':
     method from
     plot.data.frame graphics
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 1.3
Check: tests
Result: ERROR
    Running the tests in ‘tests/run-testthat-gstudio.R’ failed.
    Last 13 lines of output:
     1: withCallingHandlers(eval(code, new_test_environment), error = capture_calls, message = function(c) invokeRestart("muffleMessage"),
     warning = function(c) invokeRestart("muffleWarning"))
     2: eval(code, new_test_environment)
     3: eval(expr, envir, enclos)
     4: read_population(path, type = "zyme", locus.columns = 4:7) at test-read_population.R:57
     5: .read_columns(path, type, locus.columns, phased, sep, header, ...)
     6: locus(alleles, type = type, phased = phased)
     7: unlist(lapply(x, function(x) locus(x, type = "zyme")))
     8: lapply(x, function(x) locus(x, type = "zyme"))
     9: FUN(X[[i]], ...)
     10: locus(x, type = "zyme")
     Error: Test failures
     Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.3
Flags: --no-vignettes
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavor: r-patched-solaris-sparc

Version: 1.3
Flags: --no-vignettes
Check: use of S3 registration
Result: WARN
    Registered S3 method from a standard package overwritten by 'gstudio':
     method from
     plot.data.frame graphics
Flavor: r-patched-solaris-sparc

Version: 1.3
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘ggplot2’ ‘raster’ ‘ggmap’ ‘popgraph’
    
    Package suggested but not available for checking: ‘knitr’
    
    VignetteBuilder package required for checking but not installed: ‘knitr’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64-snowleopard