CRAN Package Check Results for Package liso

Last updated on 2015-08-03 13:47:00.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2 0.64 123.54 124.18 NOTE
r-devel-linux-x86_64-debian-gcc 0.2 0.64 122.72 123.36 NOTE
r-devel-linux-x86_64-fedora-clang 0.2 245.66 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2 228.07 NOTE
r-devel-osx-x86_64-clang 0.2 193.80 NOTE
r-devel-windows-ix86+x86_64 0.2 3.00 220.00 223.00 NOTE
r-patched-linux-x86_64 0.2 0.66 126.09 126.74 NOTE
r-patched-solaris-sparc 0.2 1659.10 NOTE
r-patched-solaris-x86 0.2 281.20 NOTE
r-release-linux-x86_64 0.2 0.64 134.79 135.43 NOTE
r-release-osx-x86_64-mavericks 0.2 NOTE
r-release-windows-ix86+x86_64 0.2 3.00 271.00 274.00 NOTE
r-oldrel-windows-ix86+x86_64 0.2 5.00 300.00 305.00 NOTE

Check Details

Version: 0.2
Check: for hidden files and directories
Result: NOTE
    Found the following hidden files and directories:
     .DESCRIPTION.swo
    These were most likely included in error. See section ‘Package
    structure’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.2
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘Iso’ ‘MASS’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     seq.log
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.2
Check: R code for possible problems
Result: NOTE
    ave.sorted: warning in matrix(y[lens == i], nr = i): partial argument
     match of ‘nr’ to ‘nrow’
    ave.sorted: warning in matrix(weights[lens == i], nr = i): partial
     argument match of ‘nr’ to ‘nrow’
    liso.adaptive: warning in multistep(coefc = rep(0, (nrow(x) - 1) *
     ncol(x)), x = x, intercept = sum(weights * y)/sum(weights), residual
     = y - sum(weights * y)/sum(weights), sorter = getSort(x)): partial
     argument match of ‘coefc’ to ‘coefchain’
    liso.backfit: warning in multistep(coefc = rep(0, (nrow(x) - 1) *
     ncol(x)), x = x, intercept = sum(weights * y)/sum(weights), residual
     = y - sum(weights * y)/sum(weights), sorter = getSort(x)): partial
     argument match of ‘coefc’ to ‘coefchain’
    &.multistep : addup: no visible global function definition for ‘approx’
    cv.liso: no visible global function definition for ‘tail’
    cv.liso: no visible binding for global variable ‘var’
    error.bars: no visible global function definition for ‘segments’
    liso.maxlamb: no visible global function definition for ‘pava’
    objsort : <anonymous>: no visible global function definition for
     ‘object.size’
    pavareg: no visible global function definition for ‘pava’
    pavaregorig: no visible global function definition for ‘pava’
    plot.multistep: no visible global function definition for ‘par’
    plot.multistep: no visible global function definition for ‘tail’
    plot.multistep: no visible global function definition for ‘plot’
    plot.multistep: no visible global function definition for ‘lines’
    plot.multistep: no visible global function definition for ‘title’
    plot.multistep: no visible global function definition for ‘points’
    plotCV: no visible global function definition for ‘plot’
    repeatplot: no visible global function definition for ‘plot’
    repeatplot: no visible global function definition for ‘lines’
    repeatplot: no visible global function definition for ‘points’
    Undefined global functions or variables:
     approx lines object.size par pava plot points segments tail title var
    Consider adding
     importFrom("graphics", "lines", "par", "plot", "points", "segments",
     "title")
     importFrom("stats", "approx", "var")
     importFrom("utils", "object.size", "tail")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.2
Check: Rd line widths
Result: NOTE
    Rd file 'cv.liso.Rd':
     \usage lines wider than 90 characters:
     cv.liso(x, y, K = 10, lambda = NULL, trace = FALSE, plot.it = FALSE, se = TRUE, weights = rep(1, length(y)), weightedcv = FALSE, huber ... [TRUNCATED]
    
    Rd file 'liso.Rd':
     \usage lines wider than 90 characters:
     liso(x, y, adaptive = TRUE, lambda = NULL, monotone = NULL, control=list(cv = NULL, liso = NULL ))
     \examples lines wider than 100 characters:
     ## Do an adaptive fit constrained to be monotone increasing, with an increased tolerance for convergence in the crossvalidation
    
    Rd file 'liso.backfit.Rd':
     \usage lines wider than 90 characters:
     liso.backfit(x, y, lambda=0, givebeta = FALSE, tol.target = 1e-04, weights= rep(1, length(y)), covweights=rep(1, ncol(x)), feed, trace= ... [TRUNCATED]
    
    Rd file 'liso.covweights.Rd':
     \examples lines wider than 100 characters:
     secondfit = liso.backfit(x,y2, 2, monotone=FALSE, covweights = liso.covweights(initialfit, signfind=TRUE))
    
    Rd file 'liso.maxlamb.Rd':
     \usage lines wider than 90 characters:
     liso.maxlamb(x=NULL,y=NULL,monotone=TRUE, covweights=rep(1, ncol(x)), weights=rep(1, length(y)))
    
    Rd file 'multistep.Rd':
     \usage lines wider than 90 characters:
     multistep(coefchain,x=NULL,intercept=0,sortedx = apply(x,2,sort),names = NULL, pinters=NULL,...)
    
    Rd file 'plot.multistep.Rd':
     \usage lines wider than 90 characters:
     plot(x = NULL, xpoints=NULL, ypoints = NULL, dims = 1:max(nrow(x$param), ncol(xpoints)) , ylimit = cbind(min(min(x),max(x)), max(max(x) ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.2
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'seq.log':
     ‘seq.log’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2
Check: R code for possible problems
Result: NOTE
    ave.sorted: warning in matrix(y[lens == i], nr = i): partial argument
     match of 'nr' to 'nrow'
    ave.sorted: warning in matrix(weights[lens == i], nr = i): partial
     argument match of 'nr' to 'nrow'
    liso.adaptive: warning in multistep(coefc = rep(0, (nrow(x) - 1) *
     ncol(x)), x = x, intercept = sum(weights * y)/sum(weights), residual
     = y - sum(weights * y)/sum(weights), sorter = getSort(x)): partial
     argument match of 'coefc' to 'coefchain'
    liso.backfit: warning in multistep(coefc = rep(0, (nrow(x) - 1) *
     ncol(x)), x = x, intercept = sum(weights * y)/sum(weights), residual
     = y - sum(weights * y)/sum(weights), sorter = getSort(x)): partial
     argument match of 'coefc' to 'coefchain'
    liso.maxlamb: no visible global function definition for ‘pava’
    pavareg: no visible global function definition for ‘pava’
    pavaregorig: no visible global function definition for ‘pava’
    Undefined global functions or variables:
     pava
Flavor: r-devel-osx-x86_64-clang

Version: 0.2
Check: R code for possible problems
Result: NOTE
    ave.sorted: warning in matrix(y[lens == i], nr = i): partial argument
     match of ‘nr’ to ‘nrow’
    ave.sorted: warning in matrix(weights[lens == i], nr = i): partial
     argument match of ‘nr’ to ‘nrow’
    liso.adaptive: warning in multistep(coefc = rep(0, (nrow(x) - 1) *
     ncol(x)), x = x, intercept = sum(weights * y)/sum(weights), residual
     = y - sum(weights * y)/sum(weights), sorter = getSort(x)): partial
     argument match of ‘coefc’ to ‘coefchain’
    liso.backfit: warning in multistep(coefc = rep(0, (nrow(x) - 1) *
     ncol(x)), x = x, intercept = sum(weights * y)/sum(weights), residual
     = y - sum(weights * y)/sum(weights), sorter = getSort(x)): partial
     argument match of ‘coefc’ to ‘coefchain’
    liso.maxlamb: no visible global function definition for ‘pava’
    pavareg: no visible global function definition for ‘pava’
    pavaregorig: no visible global function definition for ‘pava’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64