CRAN Package Check Results for Package plmDE

Last updated on 2015-04-27 11:48:46.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 1.22 22.04 23.26 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.52 22.87 24.39 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 48.39 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 44.24 NOTE
r-devel-osx-x86_64-clang 1.0 48.02 NOTE
r-devel-windows-ix86+x86_64 1.0 5.00 50.00 55.00 NOTE
r-patched-linux-x86_64 1.0 1.19 21.96 23.15 NOTE
r-patched-solaris-sparc 1.0 292.20 NOTE
r-patched-solaris-x86 1.0 59.00 NOTE
r-release-linux-x86_64 1.0 1.19 21.62 22.80 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-osx-x86_64-snowleopard 1.0 ERROR
r-release-windows-ix86+x86_64 1.0 6.00 44.00 50.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 5.00 40.00 45.00 NOTE

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘R.oo’ ‘limma’ ‘splines’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     head.DEresults head.plmDE hist.DEresults info.plmDE
     plmDEmodel.default plot.DEresults
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'info.plmDE.Rd':
     \examples lines wider than 100 characters:
     DataInfo = data.frame(sample = names(ExpressionData), group = c(rep("Control", 50), rep("Diseased", 50)), weight = abs(rnorm(100, 50, 2 ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-linux-x86_64

Version: 1.0
Check: package dependencies
Result: ERROR
    Package required but not available: ‘limma’
    
    Packages suggested but not available for checking:
     ‘Biobase’ ‘edgeR’ ‘DESeq’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64-snowleopard