HardyWeinberg: Graphical Tests for Hardy-Weinberg Equilibrium

Contains tools for exploring Hardy-Weinberg equilibrium for diallelic genetic marker data. All classical tests (chi-square, exact, likelihood-ratio and permutation tests) for Hardy-Weinberg equilibrium are included in the package, as well as functions for power computation and for the simulation of marker data under equilibrium and disequilibrium. Functions for testing equilibrium in the presence of missing data by using multiple imputation are also provided. Implements several graphics for exploring the equilibrium status of a large set of diallelic markers: ternary plots with acceptance regions, log-ratio plots and Q-Q plots.

Version: 1.5.5
Depends: R (≥ 1.8.0), mice
Published: 2015-02-26
Author: Jan Graffelman
Maintainer: Jan Graffelman <jan.graffelman at upc.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: http://www.r-project.org, http://www-eio.upc.edu/~jan
NeedsCompilation: no
Citation: HardyWeinberg citation info
In views: Genetics
CRAN checks: HardyWeinberg results

Downloads:

Reference manual: HardyWeinberg.pdf
Vignettes: Exploring diallelic genetic markers: the \pkg{HardyWeinberg package}
Package source: HardyWeinberg_1.5.5.tar.gz
Windows binaries: r-devel: HardyWeinberg_1.5.5.zip, r-release: HardyWeinberg_1.5.5.zip, r-oldrel: HardyWeinberg_1.5.5.zip
OS X Snow Leopard binaries: r-oldrel: HardyWeinberg_1.5.5.tgz
OS X Mavericks binaries: r-release: HardyWeinberg_1.5.5.tgz
Old sources: HardyWeinberg archive

Reverse dependencies:

Reverse imports: compareGroups, MultiPhen