aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

A cross-platform R framework that facilitates processing of any number of Affymetrix microarray samples regardless of computer system. The only parameter that limits the number of chips that can be processed is the amount of available disk space. The Aroma Framework has successfully been used in studies to process tens of thousands of arrays. This package has actively been used since 2006.

Version: 2.13.2
Depends: R (≥ 3.1.1), R.utils (≥ 2.0.2), aroma.core (≥ 2.13.1)
Imports: methods, R.methodsS3 (≥ 1.7.0), R.oo (≥ 1.19.0), R.cache (≥ 0.10.0), R.devices (≥ 2.13.0), R.filesets (≥ 2.7.2), aroma.apd (≥ 0.6.0), MASS, splines, matrixStats (≥ 0.14.0)
Suggests: DBI (≥ 0.3.1), gsmoothr (≥ 0.1.7), RColorBrewer (≥ 1.1-2), Biobase (≥ 2.28.0), BiocGenerics (≥ 0.14.0), affxparser (≥ 1.40.0), affy (≥ 1.46.0), affyPLM (≥ 1.44.0), aroma.light (≥ 2.4.0), gcrma (≥ 2.40.0), limma (≥ 3.24.1), oligo (≥ 1.32.0), oligoClasses (≥ 1.30.0), pdInfoBuilder (≥ 1.32.0), preprocessCore (≥ 1.28.0), AffymetrixDataTestFiles, dChipIO (≥ 0.1.1)
Published: 2015-05-27
Author: Henrik Bengtsson [aut, cre, cph], James Bullard [ctb], Kasper Hansen [ctb], Pierre Neuvial [ctb], Elizabeth Purdom [ctb], Mark Robinson [ctb], Ken Simpson [ctb]
Maintainer: Henrik Bengtsson <henrikb at braju.com>
BugReports: https://github.com/HenrikBengtsson/aroma.affymetrix/issues
License: LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)]
URL: http://www.aroma-project.org/, https://github.com/HenrikBengtsson/aroma.affymetrix
NeedsCompilation: no
Citation: aroma.affymetrix citation info
Materials: NEWS
CRAN checks: aroma.affymetrix results

Downloads:

Reference manual: aroma.affymetrix.pdf
Package source: aroma.affymetrix_2.13.2.tar.gz
Windows binaries: r-devel: aroma.affymetrix_2.13.2.zip, r-release: aroma.affymetrix_2.13.2.zip, r-oldrel: aroma.affymetrix_2.13.2.zip
OS X Snow Leopard binaries: r-oldrel: aroma.affymetrix_2.13.0.tgz
OS X Mavericks binaries: r-release: aroma.affymetrix_2.13.2.tgz
Old sources: aroma.affymetrix archive

Reverse dependencies:

Reverse depends: ACNE, NSA
Reverse suggests: MPAgenomics