muma: Metabolomics Univariate and Multivariate Analysis

Preprocessing of high-throughput data (normalization and scalings); Principal Component Analysis with help tool for choosing best-separating principal components and automatic testing for outliers; automatic univariate analysis for parametric and non-parametric data, with generation of specific reports (volcano and box plots); partial least square discriminant analysis (PLS-DA); orthogonal partial least square discriminant analysis (OPLS-DA); Statistical Total Correlation Spectroscopy (STOCSY); Ratio Analysis Nuclear Magnetic Resonance (NMR) Spectroscopy (RANSY).

Version: 1.4
Depends: car, pdist, pls, gplots, mvtnorm, robustbase, gtools, bitops, caTools, pcaPP, rrcov
Published: 2012-12-03
Author: Edoardo Gaude, Francesca Chignola, Dimitrios Spiliotopoulos, Silvia Mari, Andrea Spitaleri and Michela Ghitti
Maintainer: Edoardo gaude <egaude541 at gmail.com>
License: GPL-2
NeedsCompilation: no
Citation: NA
Materials: NA
CRAN checks: muma results

Downloads:

Reference manual: muma.pdf
Package source: muma_1.4.tar.gz
Windows binaries: r-devel: muma_1.4.zip, r-release: muma_1.4.zip, r-oldrel: muma_1.4.zip
OS X Snow Leopard binaries: r-release: muma_1.4.tgz, r-oldrel: muma_1.4.tgz
OS X Mavericks binaries: r-release: muma_1.4.tgz
Old sources: muma archive