phylosim: Flexible Simulations of Biological Sequence Evolution

An extensible object-oriented framework for the Monte Carlo simulation of sequence evolution written in 100 percent R. It is built on the top of the R.oo and ape packages and uses Gillespie's direct method to simulate substitutions, insertions and deletions.

Version: 3.0.2
Depends: R (≥ 2.15.2), R.oo (≥ 1.13.0), ape (≥ 2.3), compoisson (≥ 0.3), ggplot2 (≥ 0.9.3)
Imports: R.methodsS3
Published: 2016-09-08
Author: Botond Sipos, Gregory Jordan
Maintainer: Botond Sipos <sbotond at>
License: GPL (≥ 3)
NeedsCompilation: no
CRAN checks: phylosim results


Reference manual: phylosim.pdf
Vignettes: PhyloSim
Package source: phylosim_3.0.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Mavericks binaries: r-release: phylosim_3.0.2.tgz, r-oldrel: phylosim_3.0.2.tgz
Old sources: phylosim archive

Reverse dependencies:

Reverse depends: pcrcoal


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